Contributed Publications

Publication Date Abstract PDF
Iyer RR, Sorrells JE, Yang L, Chaney EJ, Spillman DR, Tibble BE, Renteria CA, Tu H, Zurauskas M, Marjanovic M, Boppart SA. Label-free metabolic and structural profiling of dynamic biological samples using multimodal optical microscopy with sensorless adaptive optics. Scientific Reports, 12:3438, 2022. 2021 PubMed
Sorrells JE, Iyer RR, Yang L, Chaney EJ, Marjanovic M, Tu H, Boppart SA. Single-photon peak event detection (SPEED): A computational method for fast photon counting in fluorescence lifetime imaging microscopy. Optics Express, 29:37759-37775, 2021. 2021 PubMed
Zurauskas M, Alex A, Park J, Hood SR, Boppart SA. Fluorescent nanodiamonds for characterization of nonlinear microscopy systems. Photonics Research, 9:2309-2318, 2021. 2021 PubMed
Coleman MJ, Selmic LE, Samuelson JP, Jennings R, Huang P-C, McLaughlin EM, Wavreille VA, Dornbusch JA, Lapsley J, Howard J, Cheng E, Kalamaras A, Hearon K, Cray M, Grimes J, Wustefeld-Janssens B, Kennedy K, Skinner O, Amsellem P, Boppart SA. Diagnostic accuracy of optical coherence tomography for surgical margin assessment for feline injection-site sarcoma. Veterinary and Comparative Oncology, 19:632-640, 2021. 2021 PubMed
Sorrells JE, Iyer RR, Yang L, Spillman DR, Chaney EJ, Tu H, Boppart SA. Real-time pixelwise phasor analysis for video-rate two-photon fluorescence lifetime imaging microscopy. Biomedical Optics Express, 12:4003-4019, 2021. 2021 PubMed
Sun Y, Wang J, Shi J, Boppart SA. Synthetic polarization-sensitive optical coherence tomography by deep learning. npj Digital Medicine, 4:105, 2021. 2021 PubMed
Sun PP, Won J, Choo-Kang G, Li S, Chen W, Monroy GL, Chaney EJ, Boppart SA, Eden JG, Nguyen TH. Inactivation and sensitization of Pseudomonas aeruginosa by microplasma jet array for treating otitis media. npj Biofilms and Microbiomes, 7:48, 2021. 2021 PubMed
Baek AE, Krawczynska N, Das Gupta A, Dvoretskiy SV, You S, Park J, Deng Y-H, Sorrells JE, Smith BP, Ma L, Nelson AT, McDowell HB, Mukherjee A, Henn M, Madak-Erdogan Z, Kong H, Boppart SA, Boppart MD, Nelson ER. The cholesterol metabolite, 27-hydroxycholesterol promotes the secretion of extracellular vesicles which promote breast cancer progression. Endocrinology, 162:bqab095, 2021. 2021 PubMed
Sternisha SM, Mukherjee P, Alex A, Chaney EJ, Barkalifa R, Wan B, Lee J-H, Rico-Jimenez J, Zurauskas M, Spillman DR, Sripada SA, Marjanovic M, Arp Z, Bhanushali DS, Hood SR, Bose S, Boppart SA. Longitudinal monitoring of cell metabolism in biopharmaceutical production using label-free fluorescence lifetime imaging microscopy (FLIM). (Invited Cover Figure) Biotechnology Journal, 16:2000629, 2021. 2021 PubMed
Zhang C, Boppart SA. Tracking the formation and degradation of fatty-acid-accumulated mitochondria using label-free chemical imaging. Scientific Reports, 11:6671, 2021. 2021 PubMed
Huang P-C, Chaney EJ, Aksamitiene E, Barkalifa R, Spillman DR, Bogan BJ, Boppart SA. Biomechanical sensing of in vivo magnetic nanoparticle hyperthermia-treated melanoma using magnetomotive optical coherence elastography. Theranostics, 11:5620-5633, 2021. 2021 PubMed
Zhu D, Wang J, Marjanovic M, Chaney EJ, Cradock KA, Higham AM, Liu ZG, Gao Z, Boppart SA. Differentiation of breast tissue types for surgical margin assessment using machine learning and polarization-sensitive optical coherence tomography. Biomedical Optics Express, 12:3021-3036, 2021. 2021 PubMed
Wang J, Chaney EJ, Aksamitiene E, Marjanovic M, Boppart SA. Computational adaptive optics for polarization-sensitive optical coherence tomography. Optics Letters, 46:2071-2074, 2021. 2021 PubMed
Bower AJ, Renteria C, Li J, Marjanovic M, Barkalifa R, Boppart SA. High-speed label-free two-photon fluorescence and lifetime imaging microscopy of metabolic transients during neuronal activity. Applied Physics Letters, 118:081104, 2021. 2021 PubMed
Won J, Hong W, Khampang P, Spillman DR, Marshall S, Yan K, Porter RG, Novak MA, Kerschner JE, Boppart SA. Longitudinal optical coherence tomography to visualize the in vivo response of middle ear biofilms to antibiotic therapy. Scientific Reports, 11:5176, 2021. 2021 PubMed
Dornbusch JA, Selmic LE, Samuelson J, Reagan JK, McLaughlin E, Wavreille VA, Ogden J, Abrams B, Kalamaras A, Green E, Hostnik E, Every L, Fuerst J, Jennings R, Premanandan C, Lorback J, Linn SC, Huang P-C, Alex A, Sorrells JE, Yang L, Boppart SA. Diagnostic accuracy of optical coherence tomography for assessing surgical margins of canine soft tissue sarcomas in observers of different specialties. Veterinary Surgery, 50:111-120, 2021. 2021 PubMed
Sorrells JE, Martin EM, Aksamitiene E, Mukherjee P, Alex A, Chaney EJ, Marjanovic M, Boppart SA. Label-free characterization of single extracellular vesicles using two-photon fluorescence lifetime imaging microscopy of NAD(P)H. Scientific Reports, 11:3308, 2021. 2021 PubMed
Dornbusch JA, Cocca C, Jennings R, Samuelson J, Vieson M, Huang P-C, Boppart SA, Wavreille VA, Selmic LE. The feasibility and utility of optical coherence tomography directed histopathology for surgical margin assessment of canine mast cell tumors. Veterinary and Comparative Oncology, doi:10.1111/vco.12654, 2020. 2020 PubMed
Dornbusch JA, Selmic LA, Huang P-C, Samuelson J, Cocca C, Wavreille VA, Boppart SA. Optical coherence tomography imaging of excised canine apocrine gland anal sac adenocarcinoma tumors. Veterinary and Comparative Oncology, doi: 10.1111/vco.12633, 2020. 2020 PubMed
Fabelo C, Selmic LE, Huang P-C, Samuelson J, Reagan JK, Kalamaras A, Wavreille V, Monroy GL, Marjanovic M, Boppart SA. Evaluating optical coherence tomography for surgical margin assessment of canine mammary tumors. Veterinary and Comparative Oncology, doi: 10.1111/vco.12632, 2020. 2020 PubMed
Zhang C, Boppart SA. Dynamic signatures of lipid droplets reveal as new markers to quantify cellular metabolic changes. Analytical Chemistry, 92:15943-15952, 2020. 2020 PubMed
You S, Chaney EJ, Tu H, Sun Y, Sinha S, Boppart SA. Label-free deep profiling of the tumor microenvironment. (Invited Cover Figure) Cancer Research, 81:2354-44, 2021. 2021 PubMed
Zurauskas M, Iyer RR, Boppart SA. Simultaneous 4-phase-shifted full-field optical coherence microscopy. Biomedical Optics Express, 12:981-992, 2021. 2021 PubMed
Xi G, Guo W, Kang D, Ma J, Fu F, Qiu L, Zheng L, He J, Fang N, Chen J, Li J, Zhuo S, Liao X, Tu H, Li L, Zhang Q, Wang C, Boppart SA, Chen J. Large-scale tumor-associated collagen signatures identify high-risk breast cancer patients. Theranostics, 11:3229-3243, 2021. 2021 PubMed
King WP, Amos J, Azer M, Baker D, Bashir R, Best C, Bethke, Boppart SA, Bralts E, Deitkus R, Durak G, Elbel S, Elliott G, Fava J, Goldenfeld N, Goodman M, Hayes C, Herndon N, Jamison S, Johnson H, Johnson M, Kolaczynski J, Lee T, Maslov S, McGregor D, Milner D, Mosley J, Mukherjee U, Musser A, Newberger M, Leary J, Pagano A, Philpott M, Pianfetti B, Pille A, Rubessa M, Rylowicz S, Selting S, Seshadr S, Shipley C, Stewart B, Switzky R, Tawfick S, Wheeler M, White K, Womack S, Wood E, Wood C, Wooldridge A. Emergency ventilator for COVID-19. PLoS ONE, 15(12):e0244963, 2020. 2020 PubMed
Liu Y-Z, Renteria C, Courtney CD, Ibrahim B, You S, Chaney EJ, Barkalifa R, Iyer RR, Zurauskas M, Tu H, Llano DA, Chistian-Hinman CA, Boppart SA. Simultaneous two-photon activation and imaging of neural activity based on spectral-temporal modulation of supercontinuum light. Neurophotonics, 7:045007, 2020. 2020 PubMed
Erickson-Bhatt SJ, Simpson DG, Boppart SA. Statistical evaluation of reader variability in assessing the diagnostic performance of optical coherence tomography. Journal of Biomedical Optics, 25:116002, 2020. 2020 PubMed
Won J, Huang P-C, Spillman DR, Chaney EJ, Wilberg A, Adam R, Klukowska M, Barkalifa R, Boppart SA. Handheld optical coherence tomography for clinical assessment of dental plaque and gingiva. Journal of Biomedical Optics, 25:116011, 2020. 2020 PubMed
Iyer RR, Zurauskas M, Cui Q, Gao L, Smith RT, Boppart SA. Full-field spectral domain optical interferometry for snapshot three-dimensional microscopy. Biomedical Optics Express, 11:5903-5919, 2020. 2020 PubMed
Dsouza R, Spillman DR Jr, Barkalifa R, Monroy GL, Chaney EJ, Johnson MA, White KC, Boppart SA. Efficacy of endotracheal tube suctioning in intubated intensive care unit patients determined by in vivo catheter-based optical coherence tomography: a pilot study. (Invited Cover Figure) Quantitative Imaging in Medicine and Surgery, 11:1-8, 2021. 2021 PubMed
Alex A, Chaney EJ, Zurauskas M, Criley JM, Spillman DR, Hutchison PB, Li J, Marjanovic M, Frey S, Arp Z, Boppart SA. In vivo characterization of minipig skin as a model for dermatological research using fluorescence lifetime imaging microscopy. (Invited Cover Figure) Experimental Dermatology, 29:953-960, 2020. 2020 PubMed
Kind MC, Zurauskas M, Alex A, Marjanovic M, Mukerjee P, Doan MX, Spillman DR, Hood S, Boppart SA. Flimview: A software framework to handle, visualize, and analyze FLIM data. F1000Research, Published online for public review, 2020. 2020 PubMed
Huang P-C, Iyer RR, Liu Y-Z, Boppart SA. Single-shot two-dimensional spectroscopic magnetomotive optical coherence elastography with graphics processing unit acceleration. Optics Letters, 45:4124-4127, 2020. 2020 PubMed
Zhu D, Wang R, Zurauskas M, Pande P, Bi J, Yuan Q, Wang L, Gao Z, Boppart SA. Automated fast computational adaptive optics for optical coherence tomography based on a stochastic parallel gradient descent algorithm. Optics Express, 28:23306-23319, 2020. 2020 PubMed
Sun Y, You S, Du X, Spaulding A, Liu ZG, Chaney EJ, Spillman DR, Marjanovic M, Tu H, Boppart SA. Real-time three-dimensional histology-like imaging by label-free nonlinear optical microscopy. Quantitative Imaging in Medicine and Surgery, 10:2177-2190, 2020. 2020 PubMed
Zurauskas M, Barkalifa R, Alex A, Marjanovic M, Spillman DR, Mukherjee P, Neitzel CD, Lee W, Medler J, Arp Z, Cleveland M, Hood SR, Boppart SA. Two-photon and fluorescence lifetime imaging enables automated differentiation of psoriasis condition in human skin. Scientific Reports, 10:9154, 2020. 2020 PubMed
Cui Q, Park J, Iyer RR, Zurauskas M, Boppart SA, Smith RT, Gao L. Development of a fast calibration method for Image Mapping Spectrometry. Applied Optics, 59:6062-6069, 2020. 2020 PubMed
Sun Y, Chen E, Thomas J, Liu Y, Tu H, Boppart SA. K-means clustering of coherent Raman spectra from extracellular vesicles visualized by label-free multiphoton imaging. Optics Letters, 45:3613-3616, 2020. 2020 PubMed
Won J, Monroy GL, Spillman DR Jr, Huang P-C, Hill MC, Novak MA, Porter RG, Chaney EJ, Barkalifa R, Boppart SA. Assessing the effect of middle ear effusions on wideband acoustic immittance using optical coherence tomography. Ear and Hearing, 41:811-824, 2020. 2020 PubMed
Renteria C, Liu Y-Z, Chaney EJ, Barkalifa R, Sengupta P, Boppart SA. Dynamic tracking algorithm for time-varying neuronal network connectivity using wide-field optical image video sequences. Scientific Reports, 10:2540, doi:10.1038/s41598-020-59227-5, 2020. 2020 PubMed
Rico-Jimenez JJ, Lee J-H, Alex A, Musaad S, Chaney EJ, Barkalifa R, Spillman DR, Olson E, Adams D, Marjanovic M, Arp Z, Boppart SA. Noninvasive monitoring of pharmacodynamics during the skin wound healing process using multimodal optical microscopy. Diabetes Research and Care, 8:e000974, doi:10.1136/mbjdrc-2019-000974, 2020. 2020 PubMed
Zhao Y, Maguluri G, Ferguson RD, Tu H, Paul K, Boppart SA, Llano DA, Iftimia N. Two-photon microscope using a fiber based approach for supercontinuum generation and light delivery to a small footprint optical head. Optics Letters, 45:909-912, 2020. 2020 PubMed
Renteria C, Suarez J, Licudine A, Boppart SA. Depixelation and enhancement of fiber bundle images by bundle rotation. Applied Optics, 59:536-544, 2020. 2020 PubMed
Lee JH, Rico-Jimenez JJ, Zhang C, Alex A, Chaney EJ, Barkalifa R, Spillman DR, Marjanovic M, Arp Z, Hood SR, Boppart SA. Simultaneous label-free auto-fluorescence and multi-harmonic imaging reveals in vivo structural and metabolic changes in mouse skin. Biomedical Optics Express, 10:5431-5444, 2019. 2019 PubMed
Sun Yi, Tu H, You S, Zhang C, Liu Y-Z, Boppart SA. Detection of weak near-infrared optical imaging signals under ambient light by optical parametric amplification. Optics Letters, 44:4391-4394, 2019. 2019 PubMed
You S, Sun Y, Yang L, Park J, Tu H, Marjanovic M, Sinha S, Boppart SA. Real-time intraoperative diagnosis by deep neural network driven mutliphoton virtual histology. NPJ Precision Oncology, 3:33. 2019. 2019 PubMed
Preciado D, Nolan RM, Joshi R, Krakovsky GM, Zhang A, Pudik NA, Kumar NK, Shelton RL, Boppart SA, Bauman NM. Otitis media middle ear effusion identification and characterization using an optical coherence tomography otoscope. Otolaryngology - Head and Neck Surgery 162(3):367-374. 2020. 2020 PubMed
Bower AJ, Sorrells JE, Li J, Marjanovic M, Barkalifa R, Boppart SA. Tracking metabolic dynamics of apoptosis with high-speed two-photon fluorescence lifetime imaging microscopy. Biomedical Optics Express, 10(12):6408-6421. 2019. 2019 PubMed
Won J, Monroy GL, Huang P-C, Hill MC, Novak MA, Porter RG, Spillman DR Jr., Chaney EJ, Barkalifa R, Boppart SA. Assessing the effect of middle ear effusions on wideband acoustic immittance using optical coherence tomography. Ear and Hearing. 2019. 2019 PubMed
You S, Barkalifa R, Chaney EJ, Tu H, Park J, Sorrells JE, Sun Y, Liu YZ, Yang L, Chen DZ, Marjanovic M, Sinha S, Boppart SA. Label-free visualization and characterization of extracellular vesicles in breast cancer. PNAS, 116(48):24012-24018. 2019. 2019 PubMed
Iyer RR, Liu Y-Z, Boppart SA. Automated sensorless single-shot closed-loop adaptive optics microscopy with feedback from computational adaptive optics. Optics Express, 27(9):12998-13014. 2019. 2019 PubMed
Cocca CJ, Selmic LE, Samuelson J, Huang P-C, Wang J, Boppart SA. Comparison between optical coherence tomographic and histopathologic appearances of artifacts caused by common surgical conditions and instrumentation. Veterinary Surgery, 48(8):1361-1371. 2019. 2019 PubMed
South FA, Liu Y-Z, Huang P-C, Kohlfarber T, Boppart SA. Local wavefront mapping in tissue using computational adaptive optics OCT. Optics Letters, 44:1186-1189. 2019. 2019 PubMed
Huang P-C, Chaney EJ, Iyer RR, Spillman DR Jr., Odintsov B, Sobh NA, Boppart SA. Interstitial magnetic thermotheray dosimetry based on shear wave magnetomotive optical coherence tomorgraphy. Biomedical Optics Express, 10:539-551. 2019. 2019 PubMed
Monroy GL, Won J, Dsouza R, Pande P, Hill MC, Porter RG, Novak MA, Spillman DR, Boppart SA. Automated classification platform for the identification of otitis media using optical coherence tomography. Nature Digital Medicine, 2:22. 2019. 2019 PubMed
Borhani N, Bower AJ, Boppart SA, Psaltis D. Digital staining through the application of deep neural networks to multi-modal multi-photon microscopy. 10:1339-1350. 2019. 2019 PubMed
Dsouza R, Spillman DR Jr, Barkalifa R, Monroy GL, Chaney EJ, White KC, Boppart SA. In vivo detection of endotracheal tube biofilms in intubated critical care patients using catheter-based optical coherence tomography. 12(5):e201800307.. 2018. 2018 PubMed
Wang J, Xu Y, Mesa KJ, South FA, ChaneyEJ, Spillman DR, Barkalifa R, Marjanovic M, Carney PS, Higham AM, Liu ZG, Boppart SA. Complementary use of polarization-sensitive and standard OCT metrics for enhanced intraoperative differentiation of breast cancer. 9:6519-6528. 2018. 2018 PubMed
Ralston TS, Marks DL, Carney PS, Boppart SA. Interferometric synthetic aperture microscopy:  inverse scattering for optical coherence tomography. Optics & Photonics News special issue of Optics in 2006, Page 25. 2006. 2006 PubMed
Oldenburg AL, Boppart SA. Optically pinpointing magnetic nanoparticles within biological tissue. Optics & Photonics News special issue of Optics in 2006, Page 24. 2006. 2006 PubMed
John R, Adie SG, Chaney EJ, Marjanovic M, Tangella KV, Boppart SA. Three-dimensional optical coherence tomography for optical biopsy of lymph nodes and assessment of metastatic disease. Annals of Surgical Oncology, 20:3685-3693. 2013. 2013 PubMed
Liu X, Svane AS, Laegsgaard J, Tu H, Boppart SA, Turchinovich D. Progress in Cherenkov femtosecond fiber lasers. J. Physics D: Applied Physics, 49:023001. 2016. 2016 PubMed
Xu Y, Darga D, Smid J, Zysk AM, Teh D, Boppart SA, Carney PS. Filtering for unwrapping noisy Doppler optical coherence tomography images for extended microscopic fluid velocity measurement range. Optics Letters, 41:4024-4027. 2016. 2016 PubMed
Liu X, Laegsgaard J, Iegorov R, Svane AS, Ilday FO, Tu H, Boppart SA, Turchinovich D. Nonlinearity-tailored fiber laser technology for low-noise ultra-wideband tunable femtosecond light generation. Photonics Research, 5:750-761. 2017. 2017 PubMed
Marjanovic M, Nguyen FT, Ahmad A, Suslick KS, Boppart SA. Characterization of magnetic nanoparticle-seeded microspheres for magnetomotive and multimodal imaging. IEEE J Selected Topics Quant Electronics – Biophotonics, 25:7101314. 2018. 2018 PubMed
Dsouza R, Won J, Monroy GL, Spillman DR, Boppart SA. Economical and compact briefcase spectral domain optical coherence tomography system for primary care and point-of-care applications. J Biomedical Optics, 23:096003. 2018. 2018 PubMed
Sun PP, Araud EM, Huang C, Shen Y, Monroy GL, Zhong S, Tong Z, Boppart SA, Eden JG, Nguyen TH. Disintegration of simulated drinking water biofilms with arrays of microchannel plasma jets. Biofilms and Microbiomes, 4:24. 2018. 2018 PubMed
Selmic LE, Samuelson J, Reagan JK, Mesa KJ, Driskell E, Li J, Marjanovic M, Boppart SA. Intraoperative imaging of surgical margins of canine soft tissue sarcoma using optical coherence tomography. Veterinary and Comparative Oncology, doi:10.111/vco.12448. 2018. 2018 PubMed
Sun Y, You S, Tu H, Spillman DR Jr, Chaney EJ, Marjanovic M, Li J, Barkalifa R, Wang J, Higham AM, Luckey NN, Cradock KA, Liu G, Boppart SA. Intraoperative visualization of the tumor microenvironment and quantification of extracellular vesicles by label-free nonlinear imaging. Science Advances. 2018. 2018 PubMed
You S, Sun Y, Chaney EJ, Zhao Y, Chen J, Boppart SA, Tu H. Slide-free virtual histochemistry (Part II): Detection of field cancerization. Biomedical Optics Express, 9:5253-5268. 2018. 2018 PubMed
You S, Sun Y, Chaney EJ, Zhao Y, Chen J, Boppart SA, Tu H. Slide-free virtual histochemistry (Part I): Development via nonlinear optics. Biomedical Optics Express, 9:5240-5252. 2018. 2018 PubMed
Bower AJ, Li J, Chaney EJ, Marjanovic M, Spillman DR, Boppart SA. High-speed imaging of transient metabolic dynamics using two-photon fluorescence lifetime imaging microscopy. Optica 5:2190-1296. 2018. 2018 PubMed
Alex A, Frey S, Angelene H, Neitzel CD, Li J, Bower AJ, Spillman DR Jr, Marjanovic M, Chaney EJ, Medler JL, Lee W, Vasist Johnson LS, Boppart SA, Arp Z. In situ bio-distribution and residency of a topical anti-inflammatory using fluorescence lifetime imaging microscopy. British Journal of Dermatology, doi:10.1111/bjd.16992. 2018. 2018 PubMed
Shen Y, Huang P-C, Huang C, Sun PP, Monroy GL, Wu W, Lin J, Espinosa-Marzal R, Boppart SA, Liu W-T, Nguyen TH. Effect of divalent ions and a polyphosphate on composition, structure, and stiffness of simulated drinking water biofilms. Nature: Biofilms and Microbiome, 4:15. 2018. 2018 PubMed
South FA, Kurokawa K, Liu Z, Liu Y-Z, Miller DT, Boppart SA. Combined hardware and computational optical wavefront correction. Biomedical Optics Express, 9:2562-2574. 2018. 2018 PubMed
Dsouza R, Won J, Monroy GL, Hill MC, Porter RG, Novak MA, Boppart SA. In vivo detection of nanometer-scale structural changes of the human tympanic membrane in otitis media. Scientific Reports, 8:8777. 2018. 2018 PubMed
You S, Tu H, Chaney EJ, Sun Y, Zhao Y, Bower AJ, Liu Y-Z, Marjanovic M, Sinha S, Pu Y, Boppart SA. Intravital imaging by simultaneous label-free autofluorescence multiharmonic microscopy. Nature Communications, 9:2125. 2018. 2018 PubMed
Huang P-C, Chaney EJ, Shelton RL, Boppart SA. Magnetomotive displacement of the tympanic membrane using magnetic nanoparticles: toward enhancement of sound perception. IEEE Trans. Biomedical Engineering, doi:10.1109/TBME.2018.2819649. 2018. 2018 PubMed
Park K, Cho NH, Jeon M, Lee SH, Jang JH, Boppart SA, Jung W, Kim J. Optical assessment of the in vivo tympanic membrane status using a handheld optical coherence tomography-based otoscope. Acta Oto-Laryngologica, 138:367-374. 2018. 2018 PubMed
Erickson-Bhatt SJ, Mesa KJ, Marjanovic M, Chaney EJ, Ahmad A, Huang P-C, Liu ZG, Cunningham K, Boppart SA. Intraoperative optical coherence tomography of the human thyroid: Feasibility for surgical assessment. Translational Research, 195:13-24. 2018. 2018 PubMed
Monroy GL, Hong W, Khampang P, Porter RG, Novak MA, Spillman DR, Barkalifa R, Chaney EJ, Kerschner JE, Boppart SA. Direct analysis of pathogenic structures affixed to the eardrum during chronic otitis media. Otolaryngology-Head and Neck Surgery, 159:117-126. 2018. 2018 PubMed
South FA, Liu Y-Z, Bower AJ, Xu Y, Carney PS, Boppart SA. Wavefront measurement using computational adaptive optics. Journal of the Optical Soceity of America A, 35:466-473. 2018. 2018 PubMed
Boppart SA, Wheeler BC, Wallaca CS. A flexible perforated microelectrode array for extended neural recordings. IEEE Trans Biomed Engr 39(1):37-42. 1992. 1992 PubMed
Monroy GL, Pande P, Nolan RM, Shelton RL, Porter RG, Novak MA, Spillman DR, Chaney EJ, McCormick DT, Boppart SA. Noninvasive in vivo optical coherence tomography tracking of chronic otitis media in pediatric subjects after surgical intervention. J Biomedical Optics, 22:121614. 2017. 2017 PubMed
Won J, Monroy GL, Huang PC, Dsouza R, Hill MC, Novak MA, Porter RG, Chaney E, Barkarlifa R, Boppart SA. Pneumatic low-coherence interferometry otoscope to quantify tympanic membrane mobility and middle ear pressure. Biomed Opt Exp 9(2):397-409. 2018. 2018 PubMed
Li J, Bower AJ, Arp Z, Olson EJ, Holland C, Chaney EJ, Marjanovic M, Pande P, Alex A, Boppart SA. Investigating the healing mechanisms of an angiogenesis-promoting topical treatment for diabetic wounds using multimodal microscopy. Journal of Biophotonics. DOI: 10.1002/jbio.201700195. 2017. 2017 PubMed
You S, Liu Y, Arp Z, Zhao Y, Chaney EJ, Marjanovic M, Boppart SA. Intracellular imaging of docosanol in living cells by coherent anti-Stokes Raman scattering microscopy. J. of Biomedical Optics, 22(7). 2017. 2017 PubMed
Paul K, Sengupta P, Ark ED, Tu H, Zhao Y, Boppart SA. Coherent control of an opsin in living brain tissue. Nature Physics, 13:1111-1116, 2017. Featured in: Biophotonics: That quantum feeling, by E. Collini, Nature Physics News and Views, 13:1040. 2017. 2017 PubMed
Shelton RL, Nolan RM, Monroy GM, Pande P, Novak MA, Porter RG, Boppart SA. Quantitative pneumatic otoscopy using a light-based ranging technique. Journal of the Association for Research in Otolaryngology, 18:555-568. 2017. 2017 PubMed
Bhaduri B, Shelton RL, Nolan RM, Hendren L, Almasov A, Labriola LT, Boppart SA. Ratiometric analysis of in vivo retinal layer thickness changes measured by optical coherence tomography for the detection of early changes in diabetic retinopathy. Journal of Biophotonics, doi: 10.1002/jbio.201600282. 2017. 2017 PubMed
Park K, Cho NH, Jang JH, Lee SH, Kim P, Jeon M, Boppart SA, Kim J, Jung W. In vivo 3D imaging of the human tympanic membrane using a wide-field diagonal-scanning optical coherence tomography probe. Applied Optics, 56:115-119. 2017. 2017 PubMed
Huang PC, Pande P, Shelton RL, Joa F, Moore D, Gillman E, Kidd K, Nolan RM, Odio M, Carr A, Boppart SA. Quantitative characterization of mechanically indented in vivo human skin in adults and infants using optical coherence tomography. 22(3):034001-034001. 2017. 2017 PubMed
Bower AJ, Chidester B, Li J, Zhao Y, Marjanovic M, Chaney EJ, Do MN, Boppart SA. A quantitative framework for the analysis of multimodal optical microscopy images. Quantitative Imaging in Medicine and Surgery, 7:24-37. 2017. 2017 PubMed
Wang H, Wang R, Cai K, He H, Liu Y, Yen J, Wang Z, Xu M, Sun Y, Zhou X, Yin Q, Tang L, Dobrucka IT, Dobrucki LW, Chaney EJ, Boppart SA, Fan TM, Lezmi S, Chen X, Yin L, Cheng J. Selective in vivo cell labeling mediated cancer targeting. Nature Chemical Biology, DOI: 10.1038/NCHEMBIO.2297. 2017. 2017 PubMed
Tu H, Liu Y, Marjanovic M, Chaney EJ, You S, Zhao Y, Boppart SA. Concurrence of extracellular vesicle enrichment and metabolic switch visualized label-free in the tumor microenvironment. Science Advances, 3:e1600675. 2017. 2017 PubMed
Bower AJ, Marjanovic M, Zhao Y, Li J, Chaney EJ, Boppart SA. Label-free in vivo cellular-level detection and imaging of apoptosis. Journal of Biophotonics, 1:143-150. 2017. 2017 PubMed
Zhao Y, Monroy GL, You S, Shelton RL, Nolan RM, Tu H, Chaney EJ, Boppart SA. Rapid diagnosis and differentiation of microbial pathogens in otitis media with a combined Raman spectroscopy and low-coherence interferometry probe: toward in vivo implementation. J. Biomedical Optics, 21:107005. 2016. 2016 PubMed
Li J, Pincu Y, Marjanovic M, Bower AJ, Chaney EJ, Jensen T, Boppart MD, Boppart SA. In vivo evaluation of adipose- and muscle-derived stem cells as a treatment for nonhealing diabetic wounds using multimodal microscopy. J. Biomedical Optics 21(8), 086006. 2016. 2016 PubMed
You S, Liu Y, Tu H, Marjanovic M, Chaney EJ, Boppart SA. Raman spectroscopic analysis reveals abnormal fatty acid composition in tumor micro- and macroenvironments in human breast and rat mammary cancer. Scientific Reports, 6:32922. 2016. 2016 PubMed
Bhaduri B, Nolan RM, Shelton RL, Pilutti LA, Motl RW, Boppart SA. Ratiometric analysis of in vivo retinal layer thicknesses in multiple sclerosis. J Biomedcial Optics, 21:095001. 2016. 2016 PubMed
Pande P, Shelton RL, Monroy GL, Nolan RM, Boppart SA. A mosaicking approach for in vivo thickness mapping of the human tympanic membrane using low coherence interferometry. Journal of the Association for Research in Otolaryngology, 17:403-416. 2016. 2016 PubMed
Pande P, Liu Y-Z, South FA, Boppart SA. An automated computational aberration correction method for broadband interferometric imaging techniques. Optics Letters, 41:3324-3327. 2016. 2016 PubMed
Tu H, Liu Y, Turchinovich D, Lyngso J, Laegsgaard J, Chaney EJ, Zhao Y, You S, Marjanovic M, Wison WL, Xu B, Dantus M, Boppart SA. Stain-free histopathology by programmable supercontinuum pulses. Nature Photonics, 10:534-540. 2016. 2016 PubMed
Monroy GL, Pande P, Shelton RL, Nolan RM, Spillman DR, Porter RG, Novak MA, Boppart SA. Non-invasive optical assessment of viscosity of middle ear effusions in otitis media. Journal of Biophotonics, DOI: 10.1002/jbio.201500313. 2017. 2017 PubMed
Bower AJ, Li J, Arp Z, Marjanovic M, Zhao Y, Chaney EJ, Boppart SA. Longitudinal in vivo tracking of adverse effects following topical steroid treatment. Experimental Dermatology, 25:362-367. 2016. 2016 PubMed
Bhaduri B, Nolan RM, Shelton RL, Pilutti LA, Motl RW, Pula JH, Boppart SA. Detection of retinal blood vessel volume loss in multiple sclerosis with optical coherence tomography. Biomedical Optics Express, 7:2321-2330. 2016. 2016 PubMed
Shen Y, Huang C, Monroy GL, Janjaroen D, Derlon N, Espinosa-Marzal R, Morgenroth E, Boppart SA, Ashbolt NJ, Liu W-T, Nguyen T-H. Response of simulated drinking water biofilm mechanical and structural properties to long-term disinfectant exposure. Environ. Sci. Technol., 50:1779-1787. 2016. 2016 PubMed
Xu Y, Liu Y-Z, Boppart SA, Carney PS. Automated interferometric synthetic aperture microscopy. Applied Optics, 55:2034-2041. 2016. 2016 PubMed
Nolan RM, Adie SG, Marjanovic M, Chaney EJ, South FA, Monroy GL, Shemonski ND, Erickson-Bhatt SJ, Shelton RL, Bower AJ, Simpson DG, Cradock KA, Liu ZG, Ray PS, Boppart SA. Intraoperative optical coherence tomography for assessing human lymph nodes for metastatic cancer.. BMC Cancer, 16:144. 2016. 2016 PubMed
Pande P, Shelton RL, Monroy GL, Nolan RM, Boppart SA. Low-cost hand-held probe for depth-resolved low-coherence interferometry. Biomed Opt Exp 8(1):338-348. 2017. 2017 PubMed
Cho NH, Lee SH, Jung W, Jang JH, Boppart SA, Kim J.   Optical coherence tomography for the diagnosis and evaluation of human otitis media.   J Korean Med Sci 30:328-335. 2015. 2015 PubMed
Liu Y, Zhao Y, Lyngso J, You S, Willson WL, Tu H, Boppart SA.   Suppressing short-term polarization noise and related spectral decoherence in all-normal dispersion fiber supercontinuum generation.   J Lightwave Tech, 33:1814-1820, 2015. 2015. 2015 PubMed
Monroy GL, Sheton RL, Nolan RM, Nguyen CT, Novak MA, Hill MC, McCormick DT, Boppart SA.   Non-invasive depth-resolved optical measurement of the tympanic membrane and middle-ear for differentiating otitis media.   Laryngoscope, doi:101002/lary25141. 2015. 2015 PubMed
Li J, Dobrucki LW, Marjanovic M, Chaney EJ, Suslick KS, Boppart SA.   Enhancement and wavelength-shifted emission of Cerekov luminescence using multifunctional microspheres.   Phys Med Biol 60:727-739. 2015. 2015 PubMed
Ahmad A, Kim J, Shemonski ND, Marjanovic M, Boppart SA.   Volumetric full-range magnetomotive optical coherence tomography.   J Biomedical Optics, 19:126001. 2014. 2014 PubMed
Shemonski ND, Ahn SS, Liu Y-Z, South FA, Carney PS, Boppart SA.   Three-dimensional motion correction using speckle and phase for in vivo computed optical interferometric tomography.   Biomedical Optics Express, 5:4131-4143. 2014. 2014 PubMed
Zhao Y, Marjanovic M, Chaney EJ, Graf BW, Mahmassani Z, Boppart MD, Boppart SA.   Longitudinal label-free tracking of cell death dynamics in living engineered human skin tissue with a multimodal microscope.   Biomedical Optics Express, 5:3699-3716. 2014. 2014 PubMed
Shen Y, Monroy GL, Derlon N, Janjaroen D, Huang C, Mogenroth E, Boppart SA, Ashbolt NJ, Liu W-T, Nguyen TH.   Role of biofilm roughness and hydrodynamic conditions in Legionella pneumophila adhesion to and detachment from simulated drinking water biofilm.   Environmental Science and Technology, 49:4274-4282, 2015. 2015. 2015 PubMed
Zhang Y, Yin Q, Yen J, Li J, Ying H, Hua Y, Chaney EJ, Boppart SA, Cheng J.   Non-invasive, real-time reporting drug release in vitro and in vivo.   Chem Commun, 51:6948-6951, 2015. 2015. 2015 PubMed
Zysk AM, Chen K, Gabrielson E, Tafra L, Gonzalez EAM, Canner JK, Schneider EB, Cittadine AJ, Carney PS, Boppart SA, Tsuchiya K, Sawyer K, Jacobs LK.   Intraoperative assessment of final margins with a handheld optical imaging probe during breast conserving surgery may reduce the reoperation rate: Results of a multi-center study.   Annals Surgical Oncology, DOI 101245/s10434-015-4665-2. 2015. 2015 PubMed
Kim J, Ahmad A, Li J, Marjanovic M, Chaney EJ, Suslick KS, Boppart SA.   Intravascular magnetomotive optical coherence tomography of targeted early-stage atherosclerotic changes in ex vivo hyperlipidemic rabbit aortas.   J Biophotonics, 9:109-116. 2016. 2016 PubMed
Shemonski ND, South FA, Liu Y-Z, Adie SG, Carney PS, Boppart SA.   Computational aberration correction for imaging of the human retina.   Optics in 2015, Optics and Photonics News, December, 26:43, 2015. 2015. 2015 PubMed
Li J, Bower AJ, Vainstein V, Gluzman-Poltorak Z, Chaney EJ, Marjanovic M, Basile LA, Boppart SA.   Effect of recombinant interleukin-12 on murine skin regeneration and cell dynamics using in vivo multimodal microscopy.   Biomedical Optics Express, 6:4277-4287, 2015. 2015. 2015 PubMed
South FA, Liu Y-Z, Xu Y, Shemonski ND, Carney PS, Boppart SA.   Polarization-sensitive interferometric synthetic aperture microscopy.   Applied Physics Letters, 107:211106, 2015. 2015. 2015 PubMed
Erickson-Bhatt SJ, Nolan RM, Shemonski ND, Adie SG, Putney J, Darga D, McCormick DT, Cittadine AJ, Zysk AM, Marjanovic M, Chaney EJ, Monroy GL, South FA, Cradock KA, Liu ZG, Sundaram M, Ray PS, Boppart SA.   Real-time imaging of the resection bed using a handheld probe to reduce incidence of microscopic positive margins in cancer surgery.   Cancer Research, 75:3706-3712, 2015. 2015. 2015 PubMed
Shemonski ND, South FA, Liu Y-Z, Adie SG, Carney PS, Boppart SA. Computational high-resolution optical imaging of the living human retina.   Nature Photonics, 9:440-443, 2015. 2015. 2015 PubMed
Liu Y-Z, Shemonski ND, Adie SG, Ahmad A, Bower AJ, Carney PS, Boppart SA.   Computed optical interferometric tomography for high-speed volumetric cellular imaging.   Biomedical Optics Express, 5:2988-3000. 2014. 2014 PubMed
Tu H, Zhao Y, Liu Y, Liu Y-Z, Boppart SA.   Noise characterization of broad-band fiber Cherenkov radiation as a visible-wavelength optical source for biophotonics imaging.   Optics Express, 22:20138-20143. 2014. 2014 PubMed
Zhao Y, Adie SG, Graf BW, Boppart SA.   Optically parametrically gated microscopy in scattering media.   Optics Express, 22:22547-22560. 2014. 2014 PubMed
South FA, Chaney EJ, Marjanovic M, Adie SG, Boppart SA.   Differentiation of ex vivo human breast tissue using polarization-sensitive optical coherence tomography.   Biomedical Optics Express, 5:3417-3426. 2014. 2014 PubMed
Liu X, Laegsgaard J, Moller U, Tu H, Boppart SA, Turchinovich D.   All-fiber femotosecond Cherenkov radiation source.   Optics Letters, 37:2769-2771. 2012. 2012 PubMed
Nguyen CT, Jung W, Kim J, Chaney EJ, Novak M, Stewart CN, Boppart SA. Non-invasive in vivo optical detection of biofilm in the human middle ear. Proceedings of the National Academy of Sciences, USA, 109:9529-9534. 2012. 2012 PubMed
Graf BW, Boppart SA. Multimodal in vivo skin imaging with integrated optical coherence and multiphoton microscopy. IEEE J Selected Topics in Quantum Electronics – Biophotonics II 18:1280-1286. 2012. 2012 PubMed
Liu Y, Tu H, Boppart SA.   Wave-breaking-extended coherent fiber supercontinuum pulse compression.  Optics in 2012, Optics and Photonics News, Optical Society of America. 2012. 2012 PubMed
Adie SG, Shemonski ND, Graf BW, Ahmad A, Carney PS, Boppart SA.   Guide-star-based computational adaptive optics for broadband interferometric tomography.   Applied Physics Letters, 101:221117. 2012. 2012 PubMed
Kim J, Ahmad A, Boppart SA.   Dual-coil magnetomotive optical coherence tomography for contrast enhancement in liquids.   Optics Express, 21:7139-7147. 2013. 2013 PubMed
Liu Y, King MD, Tu H, Zhao Y, Boppart SA.   Broadband nonlinear vibrational spectroscopy by shaping a coherent fiber supercontinuum.   Optics Express, 21:8269-8275. 2013. 2013 PubMed
Janjaroen D, Ling F, Monroy GL, Derlon N, Mogenroth E, Boppart SA, Liu W-T, Nguyen TH. Roles of ionic strength and biofilm roughness on deposition kinetics of Escherichia coli onto groundwater biofilm growth on PVC surfaces. Water Research, 47:2531-2542. 2013. 2013 PubMed
Liu Y, Tu H, Benalcazar WA, Chaney EJ, Boppart SA.   Multimodal nonlinear microscopy by shaping a fiber supercontinuum from 900 to 1160 nm.   IEEE J Selected Topics in Quantum Mechanics – Biophotonics I 18:1209-1214. 2012. 2012 PubMed
Liu Y, Tu H, Boppart SA.   Wave-breaking-extended fiber supercontinuum generation for high compression-ratio transform-limited pulse compression.   Optics Letters, 37:2172-2174. 2012. 2012 PubMed
Adie SG, Graf BW, Ahmad A, Carney PS, Boppart SA.   Computational adaptive optics for broadband optical interferometric tomography of biological tissue.   Proceedings of the National Academy of Sciences, USA, 109:7175-7180. 2012. 2012 PubMed
Kennedy BF, Liang X, Adie SG, Gerstmann DK, Quirk BC, Boppart SA, Sampson DD.   In vivo three-dimensional optical coherence elastography.   Optics Express, 19:6623-6634. 2011. 2011 PubMed
Ding H, Liang X, Wang Z, Boppart SA, Tangella K, Popescu G.   Measuring the scattering parameters of tissues from quantitative phase imaging of thin slices.   Optics Letters, 36:2281-2283. 2011. 2011 PubMed
Tu H, Liu Y, Turchinovich D, Boppart SA.   Compression of fiber supercontinuum pulses to the Fourier limit in a high-numerical aperture focus.   Optics Letters, 36:2315-2317. 2011. 2011 PubMed
John R, Nguyen FT, Kolbeck KJ, Chaney EJ, Marjanovic M, Suslick KS, Boppart SA.   Targeted multi-functional multi-modal protein-shell microspheres as cancer imaging contrast agents.   Molecular Imaging and Biology, DOI: 101007/s11307-011-0473-7. 2012. 2012 PubMed
Tu H, Liu Y, Liu X, Turchinovich D, Laegsgaard J, Boppart SA.   Nonlinear polarization dynamics in a weakly birefringent all-normal dispersion photonic crystal fiber: toward a practical coherent fiber supercontinuum laser.   Optics Express, 20:1113-1128. 2012. 2012 PubMed
Benalcazar WA, Jung W, Boppart SA.   Aberration characterization for the optimal design of high-resolution endoscopic optical coherence tomography catheters.   Optics Letters, 37:1100-1102. 2012. 2012 PubMed
Tu H, Liu Y, Laegsgaard J, Turchinovich D, Siegel M, Kopf D, Li H, Gunaratne T, Boppart SA.   Cross-validation of theoretically-quantified fiber continuum generation and absolute pulse measurement by MIIPS for a broadband coherently-controlled optical source.   Applied Physics B, 106:379-384. 2012. 2012 PubMed
Boulos SP, Prigozhin MB, Liu Y, Wirth AJ, Boppart SA, Gruebele M, Murphy CJ.   The gold nanorod-biology interface: from proteins to cells to tissue.   Current Physical Chemistry, 3:128-135. 2013. 2013 PubMed
Sun JG, Adie SG, Chaney EJ, Boppart SA.   Segmentation and correlation of optical coherence tomography and x-ray images for breast cancer diagnostics.   Journal of Innovative Optical Health Sciences, 6:1350015. 2013. 2013 PubMed
Crecea V, Graf BW, Kim T, Popescu G, Boppart SA.   High resolution phase-sensitive magnetomotive optical coherence microscopy for tracking magnetic microbeads and cellular mechanics.   IEEE J Sel Topics Quantum Electronics – Biophotonics, 20:6800907. 2014. 2014 PubMed
Tu H, Boppart SA.   Coherent anti-Stokes Raman scattering microscopy: overcoming technical barriers for clinical translation.   Journal of Biophotonics, 7:9-22. 2014. 2014 PubMed
Tu H, Zhao Y, Liu Y, Boppart SA.   Static third-harmonic lines in widely variable fiber continuum generation.   Physical Review A, 89:013813. 2014. 2014 PubMed
Sayegh SI, Nolan RM, Jung W, Kim J, McCormick DT, Chaney EJ, Stewart CN, Boppart SA.   Comparison of a MEMS-based handheld OCT scanner with a commercial desktop OCT system for retinal evaluation.   Transl Vis Sci Tech 3:1-9. 2014. 2014 PubMed
Ahmad A, Kim J, Sobh NA, Boppart SA.   Magnetomotive optical coherence tomography using magnetic particles to induce mechanical waves. Biomedical Optics Express, 5:2349-2361. 2014. 2014 PubMed
Xu Y, Chng XKB, Adie SG, Boppart SA, Carney PS.   Multifocal interferometric synthetic aperture microscopy.  Optics Express, 22:16606-16618. 2014. 2014 PubMed
Shemonski ND, Adie SG, Liu Y-Z, South FA, Carney PS, Boppart SA.   Stability in computed optical interferometric tomography (Part I): Stability requirements.   Optics Express, 22:19183-19197. 2014. 2014 PubMed
Shemonski ND, Ahmad A, Adie SG, Liu Y-Z, South FA, Carney PS, Boppart SA.   Stability in computed optical interferometric tomography (Part II): In vivo stability assessment.   Optics Express, 22:19314-19326. 2014. 2014 PubMed
Tu H, Laegsgaard J, Zhang R, Tong S, Liu Y, Boppart SA.   Bright broadband coherent fiber sources emitting strongly blue-shifted resonant dispersive wave pulses.   Optics Express, 21:188-196. 2013. 2013 PubMed
Graf BW, Chaney EJ, Marjanovic M, Adie SG, De Lisio M, Valero MC, Boppart MD, Boppart SA. Long-term time-lapse multimodal intravital imaging of regeneration and bone-marrow-derived cell dynamics in skin.   Technology, 1:1-12, DOI:101142/S2339547813500027. 2013. 2013 PubMed
Crecea V, Ahmad A, Boppart SA.   Magnetomotive optical coherence elastography for microrheology of biological tissues.   J Biomedical Optics, 18:121504. 2013. 2013 PubMed
Cha C, Antoniadou E, Lee M, Jeong JH, Ahmed WW, Saif TA, Boppart SA, Kong H.   Tailoring hydrogel adhesion to polydimethylsiloxane substrates using polysaccharide glue.   Angewandte Chemie, DOI: 101002/ange201302925. 2013. 2013 PubMed
Jeong JH, Liang Y, Jang M, Cha C, Chu C, Lee H, Jung WG, Kim JW, Boppart SA, Kong H.   Stiffness-modulated water retention and neovascularization of dermal fibroblast-encapsulating collagen gel.   Tissue Engineering Part A, 19:1275-1284. 2013. 2013 PubMed
Ahmad A, Shemonski ND, Adie SG, Kim H-S, Hwu W-M, Carney PS, Boppart SA.   Real-time in vivo computed optical Interferometric tomography.   Nature Photonics, 7:444-448. 2013. 2013 PubMed
Liu X, Villanueva G, Laegsgaard J, Moller U, Tu H, Boppart SA, Turchinovich D.   Low-noise operation of all-fiber femtosecond Cherenkov laser.   IEEE Photonics Technology Letters, 25:892-895. 2013. 2013 PubMed
Nguyen CT, Robinson SR, Jung W, Novak MA, Boppart SA, Allen JB.   Investigation of bacterial biofilm in the human middle ear using optical coherence tomography and acoustic measurements.   Hearing Research, 301:193-200. 2013. 2013 PubMed
Lu S, Wang Y, Huang H, Pan Y, Chaney EJ, Boppart SA, Ozer H, Strongin AY, Wang Y.   Quantitative FRET imaging to visualize invasiveness of live breast cancer cells.   PLoS One, 8:e58569. 2013. 2013 PubMed
Graf BW, Chaney EJ, Marjanovic M, De Lisio M, Valero MC, Boppart MD, Boppart SA.   In vivo imaging of immune cell dynamics in skin in response to zinc-oxide nanoparticle exposure.   Biomedical Optics Express, 4:1817-1828. 2013. 2013 PubMed
Liang X, Boppart SA. Biomechanical properties of in vivo human skin by dynamic optical coherence elastography. IEEE Trans Biomed Engr 57:953-959. 2010. 2010 PubMed
John R, Rezaeipoor R, Adie SG, Chaney EJ, Oldenburg AL, Marjanovic M, Halder JP, Sutton B, Boppart SA. In vivo magnetomotive optical molecular imaging using targeted magnetic nanoprobes.   PNAS, 107:8085-8090. 2010. 2010 PubMed
Ahmad A, Adie SG, Wang M, Boppart SA. Sonification of optical coherence tomography data and images.   Optics Express, 18:9934-9944. 2010. 2010 PubMed
Ralston TS, Adie SG, Marks DL, Boppart SA, Carney PS. Cross-validation of interferometric synthetic aperture microscopy and optical coherence tomography.   Optics Letters, 35:1683-1685. 2010. 2010 PubMed
Chaney EJ, Tang L, Tong R, Cheng J, Boppart SA. Lymphatic biodistribution of polylactide nanoparticles. Molecular Imaging, 9:153-162. 2010. 2010 PubMed
Chowdary PD, Benalcazar WA, Jiang Z, Marks DL, Boppart SA, Gruebele M. High speed nonlinear interferometric vibrational analysis of lipids by spectral decomposition.   Analytical Chemistry, 82:3812-3818. 2010. 2010 PubMed
Nguyen FT, Zysk AM, Chaney EJ, Adie SG, Kotynek JG, Oliphant UJ, Bellafiore FJ, Rowland KM, Johnson PA, Boppart SA.   Optical coherence tomography: The intraoperative assessment of lymph nodes in breast cancer.   IEEE Engineering in Medicine & Biology Magazine, 29:63-70. 2010. 2010 PubMed
Oldenburg AL, Boppart SA. Resonant acoustic spectroscopy of soft tissues using embedded magnetomotive nanotransducers and optical coherence tomography. Phys Med Biol 55:1189-1201. 2010. 2010 PubMed
Rezaeipoor R, Oldenburg AL, Adie SG, Chaney EJ, Rinne SA, Boppart SA. Fc-directed antibody conjugation of magnetic nanoparticles for ultra-sensitive and specific molecular targeting. J Innovative Optical Health Sciences, 2:387-396. 2009. 2009 PubMed
Crecea V, Oldenburg AL, Liang X, Ralston TS, Boppart SA. Magnetomotive nanoparticle transducers for optical rheology of viscoelastic materials. Optics Express, 17:23114-23122. 2009. 2009 PubMed
Geddes JB III, Marks DL, Boppart SA. Design of matched optical pulses for coherent Raman imaging. Optics in 2009 - Optics and Photonics News, Optical Society of America, pg 31. 2009. 2009 PubMed
Liang X, Crecea V, Orenscanin M, Insana MF, Boppart SA. Measurements of biomechanics by dynamic optical coherence elastography. Optics in 2009 - Optics and Photonics News, Optical Society of America, pg 18. 2009. 2009 PubMed
Liang X, Orescanin M, Toohey KS, Insana MF, Boppart SA. Acoustomotive optical coherence elastography for measuring material mechanical properties. Optics Letters, 34(19):2894-2896. 2009. 2009 PubMed
Jiang Z, Leaird DE, Long CM, Boppart SA, Weiner AM. Optical arbitrary waveform characterization using linear spectrograms. Optics Communications, 283:3017-3021. 2010. 2010 PubMed
John R, Chaney EJ, Boppart SA. Dynamics of magnetic nanoparticle-based contrast agents in tissues tracked using magnetomotive optical coherence tomography.   IEEE J Selected Topics Quantum Elect 16:691-697. 2010. 2010 PubMed
Chaney EJ, Nguyen CT, Boppart SA.   Novel method for non-invasive induction of a middle-ear biofilm in the rat.   Vaccine, 29:1628-1633. 2011. 2011 PubMed
Tu H, Liu Y, Laegsgaard J, Sharma U, Siegel M, Kopf D, Boppart SA.   Scalar generalized nonlinear Schrodinger equation-quantified continuum generation in an all-normal dispersion photonic crystal fiber for broadband coherent optical sources.   Optics Express, 18:27872-27884. 2010. 2010 PubMed
Jung W, Benalcazar W, Sharma U, Ahmad A, Tu H, Boppart SA.   Numerical analysis of gradient index lens-based optical coherence tomography imaging probes.   J Biomed Optics 15:066027. 2010. 2010 PubMed
Adie SG, Liang X, Kennedy BF, John R, Sampson DD, Boppart SA.   Spectroscopic optical coherence elastography.   Optics Express, 18:25519-25534. 2010. 2010 PubMed
Liang X, Crecea V, Boppart SA.   Dynamic optical coherence elastography:  A review.   J Innovative Optical Health Sciences, 3:221-233. 2010. 2010 PubMed
Nguyen CT, Tu H, Chaney EJ, Stewart CN, Boppart SA.   Non-invasive optical interferometry for the assessment of biofilm growth in the middle ear.   Biomedical Optics Express, 1:1104-1116. 2010. 2010 PubMed
Tu H, Shin S, John R, Boppart SA.   Long-period fiber gratings spontaneously written by a mechanism markedly different from Hill grating formation.   Applied Physics Letters, 97:121104. 2010. 2010 PubMed
Graf BW, Adie SG, Boppart SA.   Correction of coherence gate curvature in high numerical aperture optical coherence imaging.   Optics Letters, 35:3120-3122. 2010. 2010 PubMed
Shin S, Sharma U, Tu H, Jung W, Boppart SA. Characterization and analysis of relative intensity noise in broadband optical sources for optical coherence tomography. IEEE Photonics Technology Letters, 22:1057-1059. 2010. 2010 PubMed
Benalcazar WA, Chowdary PD, Jiang Z, Marks DL, Chaney EJ, Gruebele M, Boppart SA. High-speed nonlinear interferometric vibrational imaging of biological tissue with comparison to Raman microscopy. IEEE J Sel Topics Quantum Elect 16:824-832. 2010. 2010 PubMed
Liang X, Adie SG, John R, Boppart SA. Dynamic spectral-domain optical coherence elastography for tissue characterization.   Optics Express, 18:14183-14190. 2010. 2010 PubMed
Jeon M, Kim J, Jung U, Lee C, Jung W, Boppart SA.   Full range k-domain linearization in spectral domain optical coherence tomography.   Applied Optics, 50:1158-1163. 2011. 2011 PubMed
Tu H, Boppart SA. Ultraviolet-visible non-supercontinuum ultrafast source enabled by switching single silicon strand-like photonic crystal fibers. Opt Exp 17(20):17983-17988. 2009. 2009 PubMed
Zysk AM, Nguyen FT, Chaney EJ, Kotynek JG, Oliphant UJ, Bellafiore FJ, Rowland KM, Johnson PA, Boppart SA. Clinical feasibility of microscopically-guided breast needle biopsy using a fiber optic probe with computer-aided detection. Technology in Cancer Research and Technology, 8:315-322. 2009. 2009 PubMed
Ding H, Nguyen FT, Boppart SA, Popescu G. Fourier transform light scattering of inhomogeneous and dynamic structures. Phys Rev Lett 101:238102. 2008. 2008 PubMed
Ralston TS, Adie SG, Marks DL, Davis BJ, Carney PS, Boppart SA. Real-time interferometric synthetic aperture microscopy for clinical applications. Optics in 2008, Optics and Photonics News, 19:32. 2008. 2008 PubMed
Marks DL, Chaney EJ, Boppart SA. Plastinated tissue samples as three-dimensional models for optical instrument characterization. Optics Express, 16:16272-16283. 2008. 2008 PubMed
Chelliyil RG, Ralston TS, Marks DL, Boppart SA. High-speed processing architecture for spectral-domain optical coherence microscopy. J Biomedical Optics, 13:044013. 2008. 2008 PubMed
Oldenburg AL, Crecea V, Rinne SA, Boppart SA. Phase-resolved magnetomotive OCT for imaging nanomolar concentrations of magnetic nanoparticles in tissues. Optics Express, 16:11525-11539. 2008. 2008 PubMed
Liang X, Oldenburg AL, Crecea V, Chaney EJ, Boppart SA. Optical micro-scale mapping of dynamic biomechanical tissue properties. Optics Express, 16:11052-11065. 2008. 2008 PubMed
Tu H, Jiang Z, Marks DL , Boppart SA. Anomalous bending effect in photonic crystal fibers. Opt Exp 16(8):5617-5622. 2008. 2008 PubMed
Marks DL, Schlachter SC, Zysk AM, Boppart SA. Group refractive index reconstruction with broadband interferometric confocal microscopy. J Opt Soc Am A 25(5):1156-1164. 2008. 2008 PubMed
Marks DL, Davis BJ, Boppart SA, Carney PS. Partially coherent illumination for inverse scattering full-field interferometric synthetic aperture microscopy. J Opt Soc Am A 26(2):376-386. 2009. 2009 PubMed
Ahmad A, Adie SG, Chaney EJ, Sharma U, Boppart SA. Cross-correlation-based image acquisition technique for manually-scanned optical coherence tomography. Optics Express, 17:8125-8136. 2009. 2009 PubMed
Graf BW, Ralston TS, Ko H-J, Boppart SA. Detecting intrinsic scattering changes correlated to neuron action potentials using optical coherence imaging. Optics Express, 17(16):13447-13457. 2009. 2009 PubMed
Rezaeipoor R, Chaney EJ, Oldenburg AL, Boppart SA. Expression order of alpha v and beta 3 integrin subunits in the N-methyl-N-nitrosourea (MNU)-induced rat mammary tumor model. Cancer Investigation, 27:496-503. 2009. 2009 PubMed
Marks DL, Geddes J, Boppart SA. Molecular identification by generating coherence between molecular normal modes using stimulated Raman scattering. Optics Letters, 34:1756-1758. 2009. 2009 PubMed
Graf BW, Jiang Z, Tu H, Boppart SA. Dual-spectrum laser source based on fiber continuum generation for integrated optical coherence and multiphoton microscopy. J Biomed Opt, 14(3):034019. 2009. 2009 PubMed
Tu H, Liang X, Marks DL, Boppart SA. Emergence of self-organized long-period fiber gratings in supercontinuum-generating optical fibers. Optics Letters, 34(5):668-670. 2009. 2009 PubMed
Tu H, Jiang Z, Marks DL, Boppart SA. Intermodal four-wave mixing from femtosecond pulse-pumped photonic crystal fiber. Applied Physics Letters, 94:101109. 2009. 2009 PubMed
Ding H, Nguyen FT, Boppart SA, Popescu G. Optical properties of tissues quantified by Fourier transform light scattering. Optics Letters, 34:1372-1374. 2009. 2009 PubMed
Tu H and Boppart SA. Optical frequency up-conversion by supercontinuum-free widely-tunable fiber-optic Cherenkov radiation. Optics Express, 17:9858-9872. 2009. 2009 PubMed
Xi C, Raskin L, Boppart SA. Evaluation of microfluidic biosensor development using microscopic analysis of molecular beacon hybridization kinetics. Biomedical Microdevices, 7:7-12, 2005. 2005. 2005 PubMed
Ralston T, Marks DL, Kamalabadi F, Boppart SA. Deconvolution methods for mitigation of transverse blurring in optical coherence tomography. IEEE Trans Image Proc Special Issue on Molecular and Cellular Bioimaging 14:1254-1264. 2005. 2005 PubMed
Marks DL, Ralston TS, Boppart SA. Speckle reduction by I-divergence regularization in optical coherence tomography. JOSA A, 22:2366-2371. 2005. 2005 PubMed
Xu C, Carney PS, Boppart SA.   Wavelength-dependent scattering in spectroscopic optical coherence tomography.   Optics Express, 13:5450-5462. 2005. 2005 PubMed
Oldenburg AL, Toublan FJ, Suslick KS, Wei A, Boppart SA.   Magnetomotive contrast for in vivo optical coherence tomography.   Optics Express, 13:6597-6614. 2005. 2005 PubMed
Luo W, Nguyen FT, Zysk AM, Ralston TS, Brockenbrough J, Marks DL, Oldenburg AL, Boppart SA.   Optical biopsy of lymph node morphology using optical coherence tomography.   Technology in Cancer Research & Treatment, 4:539-547. 2005. 2005 PubMed
Marks DL, Vinegoni C, Bredfeldt JS, Boppart SA.   Nonlinear interferometric vibrational imaging:  Efficient detection of coherent anti-Stokes Raman scattering.   Optics and Photonics News, 12:23. 2005. 2005 PubMed
Vinegoni C, Ralston TS, Tan W, Luo W, Marks DL, Boppart SA.   Integrated structural and functional optical imaging combining spectral-domain optical coherence and multiphoton microscopy.   Appl Phys Lett 88:053901. 2006. 2006 PubMed
Pasquesi JJ, Schlachter S, Boppart MD, Chaney E, Kaufman SJ, Boppart SA.   In vivo detection of exercised-induced ultrastructural changes in genetically-altered murine skeletal muscle using polarization-sensitive optical coherence tomography.   Optics Express, 14:1547-1556. 2006. 2006 PubMed
Xu C, Vinegoni C, Ralston TS, Luo W, Tan W, Boppart SA.   Spectroscopic spectral-domain optical coherence microscopy.   Opt Lett 31:1079-1081. 2006. 2006 PubMed
Luo W, Marks DL, Ralston TS, Boppart SA.   Three-dimensional optical coherence tomography of the embryonic murine cardiovascular system.   J Biomedical Opt Special Issue on Cardiovascular Photonics 11(2):021014. 2006. 2006 PubMed
Oldenburg AL, Gunther JR, Boppart SA. Imaging magnetically labeled cells with magnetomotive optical coherence tomography. Optics Letters, 30:747-749, 2005. 2005. 2005 PubMed
Bredfeldt JS, Marks DL, Vinegoni C, Hambir S, Dlott DA, Boppart SA. Molecularly-sensitive optical coherence tomography. Optics Letters, 30:495-497, 2005. 2005. 2005 PubMed
Boppart SA, Luo W, Marks DL, Singletary KW. Optical coherence tomography: feasibility for basic research and image-guided surgery of breast cancer. Breast Cancer Research and Treatment, 84:85-97. 2004. 2004 PubMed
Marks DL, Boppart SA. Nonlinear interferometric vibrational imaging. Phys Rev Lett 92:123905. 2004. 2004 PubMed
Xi C, Marks DL, Parikh DS, Raskin L, Boppart SA. Structural and functional imaging of three-dimensional microfluidic mixers using optical coherence tomography. Proc Natl Acad Sci 101:7516-7521. 2004. 2004 PubMed
Xu C, Ye J, Marks DL, Boppart SA. Near-infrared dyes as constrast-enhancing agents for spectroscopic optical coherence tomography. Optics Letters, 29:1647-1649. 2004. 2004 PubMed
Xu C, Boppart SA. Separation of absorption and scattering profiles in spectroscopic optical coherence tomography using a least-square algorithm. Optics Express, 12:4790-4803. 2004. 2004 PubMed
Marks DL, Carney PS, Boppart SA. Adaptive spectral apodization for side-lobe reduction in optical coherence tomography. J Biomed Optics 9:1281-1287. 2004. 2004 PubMed
Roach WP, Cain CP, Narayan DG, Worniallo E, Winter KP, Noojin GD, Stolarski DJ, DiCarlo CD, Boppart SA, Birngruber R, Fujimoto JG, Toth Ca. The retinal response of macacca mulatto to picosecond laser pulses of varying energy and spot-size. J Biomed Optics 9:1288-1296. 2004. 2004 PubMed
Marks DL, Vinegoni C, Bredfeldt JS, Boppart SA. Interferometric differentiation between resonant coherent anti-Stokes Raman scattering and nonresonant four-wave-mixing processes. Applied Phys Lett 85:5787-5789. 2004. 2004 PubMed
Tan W, Sendemir-Urkmez A, Fahrner LJ, Jamison R, Leckband DL, Boppart SA. Structural and functional optical imaging of three-dimensional engineered tissue development. Tissue Enginering, 10:1747-1756, 2004. 2004. 2004 PubMed
Xu C, Kamalabadi F, Boppart SA. Comparative performance analysis of time-frequency distributions for spectroscopic optical coherence tomography. Applied Optics, 44:1813-1822, 2005. 2005. 2005 PubMed
Vinegoni C, Bredfeldt JS, Marks Dl, Boppart SA. Nonlinear optical contrast enhancement for optical coherence tomography. Optics Express 12:333-341. 2004. 2004 PubMed
Ko H-J, Tan W, Stack R, Boppart SA. Optical coherence elastography of engineered and developing tissue. Tissue Engineering, 12:63-73. 2006. 2006 PubMed
Tan W, Vinegoni C, Norman JJ, Desai TA and Boppart SA. Imaging cellular responses to mechanical stimuli within three-dimensional tissue constructs. Microscopy Research and Technique, 70:361-371. 2007. 2007 PubMed
Marks DL, Ralston TS, Boppart SA and Carney PS. Inverse scattering for frequency-scanned full-field optical coherence tomography. J Opt Soc Am A 24(4):1034-1041. 2007. 2007 PubMed
Zysk AM, Marks DL, Liu DY, Boppart SA. Needle-based reflection refractometry of scattering samples using coherence-gated detection. Optics Express, 15(8):4784-4794. 2007. 2007 PubMed
Davis BJ, Ralston TS, Marks DL, Boppart SA, Carney PS. Autocorrelation artifacts in optical coherence tomography and interferometric synthetic aperture microscopy. Optics Letters, 32(11):1441-1443. 2007. 2007 PubMed
Choi JH, Nguyen FT, Barone PW, Heller DA, Moll AE, Patel D, Boppart SA, and Strano MS. Multimodal biomedical imaging with asymmetric single-walled carbon nanotube/iron oxide nanoparticle complexes. Nano Letters, 7(4):861-867. 2007. 2007 PubMed
Davis BJ, Schlachter SC, Marks DL, Ralston TS, Boppart SA, and Carney PS. Nonparaxial vector-field modeling of optical coherence tomography and interferometric synthetic aperture microscopy. J Opt Soc Am A 24(9):2527-2542. 2007. 2007 PubMed
Tu H, Marks DL, Koh YL, Boppart SA. Stabilization of continuum generation from normally dispersive nonlinear optical fibers for a tunable broad bandwidth source for optical coherence tomography. Opt Lett 32(14):2037-2039. 2007. 2007 PubMed
Tu H, Koh YL, Marks DL, Boppart SA. Localized waveguide formation in germanosilicate fiber transmitting femtosecond IR pulses. J Opt Soc Am B 25(2):274-278. 2008. 2008 PubMed
Ralston TS, Marks DL, Carney PS, Boppart SA. Real-time interferometric synthetic aperture microscopy. Optics Express, 16(4):2555-2569. 2008. 2008 PubMed
Tu H, Marks DL, Jiang Z, Boppart SA. Photoscattering effect in supercontinuum-generating photonic crystal fiber. Applied Physics Letters, 92:061104-1-061104-3. 2008. 2008 PubMed
Ralston TS, Marks DL, Carney PS, Boppart SA. Interferometric synthetic aperture microscopy.   Nature Physics, 3:129-134. 2007. 2007 PubMed
Zysk AM, Adie SG, Armstrong JJ, Leigh MS, Paduch A, Sampson DD, Nguyen FT, Boppart SA. Needle-based refractive index measurement using low-coherence interferometry.   Optics Letters, 32(4):385-387. 2007. 2007 PubMed
Ralston TS, Marks DL, Boppart SA, Carney PS.   Inverse scattering for high-resolution interferometric microscopy.   Optics Letters, 31(24):3585-3587. 2006. 2006 PubMed
Zysk AM, Chaney EJ, Boppart SA.   Refractive index of carcinogen-induced rat mammary tumours.   Phys Med Biol 51(9):2165-77. 2006. 2006 PubMed
Toublan FJJ, Boppart SA, Suslick KS.   Tumor targeting by surface modified microspheres.  J Am Chem Soc 128:3472-3473. 2006. 2006 PubMed
Ralston TS, Marks DL, Carney PS, Boppart SA.   Inverse scattering for optical coherence tomography.   JOSA A, 23(5):1027-1037. 2006. 2006 PubMed
Jones GW, Marks DL, Vinegoni C, Boppart SA.   High-spectral-resolution coherent anti-Stokes Raman scattering with interferometrically-detected broadband chirped pulses.   Opt Lett 31(10):1543-1545. 2006. 2006 PubMed
Zysk AM, Boppart SA.   Computational methods for analysis of human breast tumor tissue in optical coherence tomography images.   J Biomedical Optics 11(5):054015. 2006. 2006 PubMed
Xi C, Marks DL, Schlachter S, Luo W, Boppart SA.   High-resolution three-dimensional imaging of biofilm development using optical coherence tomography.   J Biomed Opt 11(3):034001-1-134001-6. 2006. 2006 PubMed
Oldenburg AL, Hansen MN, Zweifel DA, Wei A, Boppart SA.   Plasmon-resonant gold nanorods as low backscattering albedo contrast agents for optical coherence tomography. Opt Express 14(15):6724-6738. 2006. 2006 PubMed
Tan W, Oldenburg AL, Norman JJ, Desai TA, Boppart SA.   Optical coherence tomography of cell dynamics in three-dimensional tissue models. Opt Express 14(16):7159-7171. 2006. 2006 PubMed
Marks DL. A family of approximations spanning the Born and Rytov scattering series. Opt Express 14(19):8837-8848. 2006. 2006 PubMed
Marks DL, Ralston TS, Carney PS, Boppart SA.   Inverse scattering for rotationally scanned optical coherence tomography.   J Opt Soc Am A 23(10):2433-2439. 2006. 2006 PubMed
Brezinski ME, Tearney GJ, Boppart SA, Swanson EA, Southern JF, Fujimoto JG. Optical biopsy with optical coherence tomography: feasibility for surgical diagnostics. J Surg Res 71:32-40. 1997. 1997 PubMed
Zuclich JA, Schuschereba ST, Zwick H, Boppart SA, Fujimoto JG, Cheney FE, Stuck BE. A comparison of laser-induced retinal damage from infrared wavelengths to that from visible wavelengths. Lasers Light 8(1):15-29. 1997. 1997 PubMed
Tearney GJ, Brezinski ME, Bouma BE, Boppart SA, Pitris C, Southern JF, Fujimoto JG. In vivo endoscopic optical biopsy with optical coherence tomography. Science 276:2037-2039. 1997. 1997 PubMed
Boppart SA, Tearney GJ, Bouma BE, Brezinski ME, Southern JF, Fujimoto JG. Noninvasive assessment of the developing xenopus cardiovascular system using optical coherence tomography. Proc Natl Acad Sci, USA 94:4256-4261. 1997. 1997 PubMed
Tearney GJ, Brezinski ME, Southern JF, Bouma BE, Boppart SA, Fujimoto JG. Optical biopsy in human gastrointestinal tissue using optical coherence tomography. Am J Gastro 92(10):1800-1804. 1997. 1997 PubMed
Brezinski ME, Tearney GJ, Weissman NJ, Boppart SA, Bouma BE, Hee MR, Weyman AE, Swanson EA, Southern JF, Fujimoto JG. Assessing Atherosclerotic plaque morphology: comparison of optical coherence tomography and high frequency intravascular ultrasound. Heart 77:397-403. 1997. 1997 PubMed
Boppart SA, Bouma BE, Pitris C, Tearney GJ, Brezinski ME, Fujimoto JG. Forward-imaging instruments for optical coherence tomography. Opt Lett 22(21):1618-1620. 1997. 1997 PubMed
Toth CA, Narayan DG, Boppart SA, Hee MR, Fujimoto JG, Birngruber R, Cain CP, DiCarlo CD, Roach WP. A comparison of retinal morphology viewed by optical coherence tomography and by light microscopy. Arch Ophthalmol 115(11):1425-1428. 1997. 1997 PubMed
Fujimoto JG, Bouma BE, Tearney GJ, Boppart SA, Pitris C, Southern JF, Brezinski ME. New technology for high-speed and high-resolution optical coherence tomography. Ann NY Acad Sci 838:95-107. 1998. 1998 PubMed
Brezinski ME, Tearney GJ, Bouma BE, Boppart SA, Pitris C, Southern JF, Fujimoto JG. Optical biopsy with optical coherence tomography. Ann NY Acad Sci 838:68-74. 1998. 1998 PubMed
Boppart SA, Bouma BE, Pitris C, Tearney GJ, Southern JF, Brezinski ME, Fujimoto JG. Intraoperative assessment of microsurgery with three-dimensional optical coherence tomography. Radiology 208:81-86. 1998. 1998 PubMed
Toth CA, Birngruber R, Boppart SA, Hee MR, Fujimoto JG, DiCarlo CD, Swanson EA, Cain CP, Narayan D, Roach WP. Argon laser retinal lesions evaluation in vivo by optical coherence tomography. Am J Ophthalmol 123:188-198. 1997. 1997 PubMed
Tearney GJ, Brezinski ME, Southern JF, Bouma BE, Boppart SA, Fujimoto JG. Optical biopsy in human urologic tissue using optical coherence tomography. J Urol 157:1915-1919. 1997. 1997 PubMed
Tearney GJ, Brezinski ME, Boppart SA, Bouma BE, Weissman NJ, Southern JF, Swanson EA, Fujimoto JG. Catheter-based optical imaging of a human coronary artery. Circulation 94:3013. 1996. 1996 PubMed
Roach WP, Rogers ME, Rockwell BA, Boppart SA, Stein CD, Bramlette CM. Ultrashort laser pulse effects in ocular and related media. Aviation Space Environ Med 65(5 Suppl):A100-A107. 1994. 1994 PubMed
Kennedy P, Boppart SA, Hammer DX, Rockwell BA, Noojin GD, Roach WP. A first-order model for computation of laser-induced breakdown thresholds in ocular and aqueous media: Part II - Comparison to Experiment. IEEE J Quant Elec QE-31:2250-2257. 1995. 1995 PubMed
Bouma BE, Tearney GJ, Boppart SA, Hee MR, Brezinski ME, Fujimoto JG. High resolution optical coherence tomographic imaging using a mode-locked Ti:Al2O3 laser source. Opt Lett 20(13):1486-1488. 1995. 1995 PubMed
Fujimoto JG, Brezinski ME, Tearney GJ, Boppart SA, Bouma BE, Hee MR, Southern JF, Swanson EA. Optical biopsy and imaging using optical coherence tomography. Nature Med 1(9):970-972. 1995. 1995 PubMed
Brezinski ME, Tearney GJ, Bouma BE, Boppart SA, Hee MR, Swanson EA, Southern JF, Fujimoto JG. Imaging of coronary artery microstructure with optical coherence tomography. Am J Cardiol 77(1):92-93. 1996. 1996 PubMed
Tearney GJ, Boppart SA, Bouma BE, Brezinski ME, Weissman NJ, Southern JF, Fujimoto JG. Scanning single-mode fiber optic catheter-endoscope for optical coherence tomography. Opt Lett 21(7):543-545. 1996. 1996 PubMed
Bouma BE, Tearney GJ, Brezinsky IP, Golubovic B, Boppart SA, Fujimoto JG. Optical coherence tomographic imaging using a mode locked Cr4+:forsterite laser source. Ultrafast Optics Conference Proceedings, Tenth International Topical Meeting, Springer-Verlag. 1996. 1996 PubMed
Boppart SA, Brezinski ME, Bouma BE, Tearney GJ, Fujimoto JG. Investigation of developing embryonic morphology using optical coherence tomography. Dev Biol 177:54-64. 1996. 1996 PubMed
Tearney GJ, Bouma BE, Boppart SA, Golubovic B, Swanson EA, Fujimoto JG. Rapid acquisition of in vivo biological images using optical coherence tomography. Opt Lett 21(17):1408-1410. 1996. 1996 PubMed
Boppart SA, Bouma BE, Brezinski ME, Tearney GJ, Fujimoto JG. Imaging developing neural morphology using optical coherence tomography. J Neurosci Meth 70:65-72. 1996. 1996 PubMed
Herrmann JM, Brezinski ME, Bouma BE, Boppart SA, Pitris C, Southern JF, Fujimoto JG. Two- and three-dimensional high-resolution imaging of the human oviduct with optical coherence tomography. Fertil Steril 70(1):155-158. 1998. 1998 PubMed
Boppart SA, Bouma BE, Pitris C, Southern JF, Brezinski ME, Fujimoto JG. In vivo cellular optical coherence tomography imaging. Nature Med 4(7):861-864. 1998. 1998 PubMed
Toublan FJJ, Suslick KS, Boppart SA, Lee TM, Oldenburg AL. Modification of protein microspheres for biomedical application. Polymer Preprints, 44:185. 2003. 2003 PubMed
Li X, Boppart SA, Van Dam J, Mashimo H, Mutinga M, Drexler W, Klein M, Pitris C, Krinsky ML, Brezinski ME, Fujimoto JG. Optical coherence tomography: advanced technology for the endoscopic imaging of Barrett's esophagus. Endoscopy 32:921-930. 2000. 2000 PubMed
Marks DL, Oldenburg AL, Reynolds JJ, Boppart SA. Study of an ultrahigh numerical aperture fiber continuum generation source for optical coherence tomography. Opt Ltr 27:2010-2012. 2002. 2002 PubMed
Marks Dl, Oldenburg AL, Reynolds JJ, Boppart SA. Digital algorithm for dispersion correction in optical coherence tomography for homogeneous and stratified media. Appl Opt 42:204-217. 2003. 2003 PubMed
Zysk A, Reynolds JJ, Marks DL, Carney PS, Boppart SA. Projected index computed tomography. Opt Letters 28:701-703. 2003. 2003 PubMed
Oldenburg AL, Reynolds JJ, Marks DL, Boppart SA. Fast-Fourier-domain delay line for in vivo optical coherence tomography with a polygonal scanner. Apl Opt 42(22):4606. 2003. 2003 PubMed
Marks DL, Oldenburg AL, Reynolds JJ, Boppart SA. Autofocus algorithm for dispersion correction in optical coherence tomography. Applied Optics 42:3038-3046. 2003. 2003 PubMed
Lazebnik M, Marks DL, Potgieter K, Gillette R, Boppart SA. Functional optical coherence tomography for detecting neural activity through scattering changes. Optics Letters, 28(14):1218-1220. 2003. 2003 PubMed
Lee TM, Toublan FJ, Sitafalwalla S, Oldenburg AL, Suslick KS, Boppart SA. Engineered microsphere contrast agents for optical coherence tomography. Optics Letters, 28(17): 1546-1548. 2003. 2003 PubMed
Xi C, Balberg M, Boppart SA, Raskin L. Use of DNA and peptide nucleic acid (PNA) molecular beacons for the detection and quantification of rRNA insolutions and in whole cells. Applied Environ Microbiol, 69(9): 5673-8. 2003. 2003 PubMed
Schaefer AW, Reynolds JJ, Marks DL, Boppart SA. Real-time digital signal processing-based optical coherence tomography and Doppler optical coherence tomography. IEEE Trans Biomed Engr 51:186-190. 2004. 2004 PubMed
Pitris C, Jesser CA, Boppart SA, Stamper DL, Brezinski ME, Fujimoto JG. Feasibility of optical coherence tomography for high resolution imaging of human gastrointestinal tract malignancies. J Gastroenterol 35:87-92. 2000. 2000 PubMed
Patwari P, Weissman NJ, Boppart SA, Jesser C, Stamper D, Fujimoto JG, Brezinski ME. Assessment of coronary plaque with optical coherence tomography and high-frequency ultrasound. Am J Cardiol 85:641-644. 2000. 2000 PubMed
Jesser CA, Boppart SA, Pitris C, Stamper DL, Nielsen GP, Brezinski ME, Fujimoto JG. High-resolution imaging of transitional cell carcinoma with optical coherence tomography: feasibility for the evaluation of bladder pathology. Br J Radiol 72:1170-1176. 1999. 1999 PubMed
Tearney GJ, Brezinski ME, Southern JF, Bouma BE, Boppart SA, Fujimoto JG. Optical biopsy in human pancreatobiliary tissue using optical coherence tomography. Digest Dis Sci 43(6):1193-1199. 1998. 1998 PubMed
Boppart SA, Brezinski ME, Pitris C, Fujimoto JG. Optical coherence tomography for neurosurgical imaging of human intracortical melanoma. Neurosurgery 43(4):834-841. 1998. 1998 PubMed
Pitris C, Goodman AK, Boppart SA, Libus JJ, Fujimoto JG, Brezinski ME. High resolution imaging of gynecological neoplasms using optical coherence tomography. Obstet Gynecol, 93:135-139. 1999. 1999 PubMed
Herrmann JM, Pitris C, Bouma BE, Boppart SA, Jesser C, Stamper DL, Fujimoto JG, Brezinski ME. High resolution imaging of normal and osteoarthritic cartilage with optical coherence tomography. J Rheumatol 26(3):627-635. 1999. 1999 PubMed
Boppart SA, Herrmann JM, Pitris C, Stamper DL, Brezinski ME, Fujimoto JG. High-resolution optical coherence tomography guided laser ablation of surgical tissue. J Surg Res 82:275-284. 1999. 1999 PubMed
Boppart SA, Deutsch TF, Rattner DW. Optical Imaging technology in minimally invasive surgery. Surg Endosc 13:718-722. 1999. 1999 PubMed
Fujimoto JG, Boppart SA, Tearney GJ, Bouma BE, Pitris C, Brezinski ME. High resolution in vivo intraarterial imaging with optical coherence tomography. Heart 82(2):128-133. 1999. 1999 PubMed
Boppart SA, Goodman AK, Pitris C, Jesser C, Libis JJ, Brezinski ME, Fujimoto JG. High-resolution imaging of endometriosis and ovarian carcinoma with optical coherence tomography: feasibility for laparoscopic-based imaging. Br J Obstet Gyn 106:1071-1077. 1999. 1999 PubMed
DiCarlo CD, Roach WP, Gagliano DA, Boppart SA, Hammer DX, Cox AB, Fujimoto JG. Comparison of optical coherence tomography imaging of cataracts with histopathology. J Biomed Opt 4(4):450-458. 1999. 1999 PubMed
Drexler W, Morgner U, Kartner FX, Pitris C, Boppart SA, Li X, Ippen EP, Fujimoto JG. In vivo ultrahigh resolution optical coherence tomography. Opt Lett 24(17):1221-1223. 1999. 1999 PubMed
Zhao Y, Tu H, Liu Y, Bower AJ, Boppart SA. Enhancement of optical coherence microscopy in turbid media by an optical parametric amplifier. Journal of Biophotonics, 8:512-521. 2015. 2015 PubMed
Ahmad A, Huang P-C, Sobh N, Pande P, Kim J, Boppart SA.   Mechanical contrast in spectroscopic magnetomotive optical coherence elastography.   Phys MedBiol 60:6655-6668. 2015. 2015 PubMed
Mesiwala NK, Shemonski ND, Sandrian M, Shelton RL, Ishiwara H, Tawbi H, Schuman JS, Boppart SA, Labriola LT.   Retinal imaging with en face optical coherence tomography to delineate photoreceptor changes in cancer associated retinopathy secondary to Merkel cell carcinoma.   J Ophthalmic Inflamm Infect, 5:53, DOI:101186/s12348-015-0053-0. 2015. 2015 PubMed
Kim J, Ahmad A, Marjanovic M, Chaney EJ, Li J, Rasio J, Hubler Z, Spillman D, Suslick KS, Boppart SA. Magnetomotive optical coherence tomography for the assessment of atherosclerotic lesions using αvβ3 integrin-targeted microspheres. Mol Imaging Biol (2014) 16:36Y43 DOI: 10.1007/s11307-013-0671-6. 2014. 2014 PubMed
Shelton R, Jung W, Sayegh SI, McCormick DT, Kim J, Boppart SA. Optical coherence tomography for advanced screening in the primary care office.   Journal of Biophotonics, DOI: 101002/jbio201200243, 7:525-533. 2014. 2014 PubMed
Graf BW, Bower A, Chaney EJ, Marjanovic M, Adie SG, De Lisio M, Valero MC, Boppart MD, Boppart SA. In vivo multimodal microscopy for detecting bone-marrow-derived cell contribution to skin regeneration. Journal of Biophotonics, 7:96-102. 2014. 2014 PubMed
Kuo W-C, Kim J, Shemonski ND, Chaney EJ, Spillman DR, Boppart SA. Real-time three-dimensional optical coherence tomography image-guided core-needle biopsy system.   (Invited Cover Figure) Biomedical Optics Express, 3:1141-1148. 2012. 2012 PubMed
Jung W, Kim J, Jeon M, Chaney EJ, Stewart CN, Boppart SA.   Handheld optical coherence tomography scanner for primary care diagnostics.   IEEE Transactions on Biomedical Engineering, Invited Cover Figure, 58:741-744. 2011. 2011 PubMed
Chowdary PD, Benalcazar WA, Jiang Z, Chaney EJ, Marks DL, Gruebele M, Boppart SA. Molecular Histopathology by Spectrally Reconstructed Nonlinear Interferometric Vibrational Imaging.   Cancer Research (Invited Cover Figure), 70:9562-9569. 2010. 2010 PubMed
Nguyen FT, Zysk AM, Chaney EJ, Kotynek JG, Oliphant UJ, Bellafiore FJ, Rowland KM, Johnson PA, Boppart SA. Intraoperative evaluation of breast tumor margins with optical coherence tomography. Cancer Research, 69:8790-8796. 2009. 2009 PubMed